GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| UCEC | cis | rs2130392 | 1 | rs11132254 | chr4:185611592 | MLF1IP | chr4:185615220-185655286:- | -0.4 | -5.43 | 2.17E-7 | Kawasaki disease |
| UCEC | cis | rs9309473 | 1 | rs1114380 | chr2:73804708 | ALMS1P | chr2:73872046-73912692:+ | 0.47 | 5.52 | 1.42E-7 | Metabolite levels |
| UCEC | cis | rs2143950 | 1 | rs11156875 | chr14:35619816 | PPP2R3C | chr14:35554679-35591679:- | 0.51 | 4.79 | 4.01E-6 | Atopic dermatitis |
| UCEC | cis | rs703842 | 1 | rs11172333 | chr12:58170335 | TSFM | chr12:58176536-58191367:+ | -0.45 | -4.98 | 1.69E-6 | Multiple sclerosis |
| UCEC | cis | rs703842 | 1 | rs11172335 | chr12:58175201 | TSFM | chr12:58176536-58191367:+ | -0.45 | -4.76 | 4.48E-6 | Multiple sclerosis |
| UCEC | cis | rs703842 | 1 | rs11172342 | chr12:58187758 | TSFM | chr12:58176536-58191367:+ | -0.45 | -4.76 | 4.48E-6 | Multiple sclerosis |
| UCEC | cis | rs703842 | 1 | rs11172343 | chr12:58188157 | TSFM | chr12:58176536-58191367:+ | -0.45 | -4.76 | 4.48E-6 | Multiple sclerosis |
| UCEC | cis | rs703842 | 1 | rs11172349 | chr12:58212528 | TSFM | chr12:58176536-58191367:+ | -0.46 | -5 | 1.58E-6 | Multiple sclerosis |
| UCEC | cis | rs703842 | 1 | rs11172351 | chr12:58213485 | TSFM | chr12:58176536-58191367:+ | -0.45 | -4.89 | 2.51E-6 | Multiple sclerosis |
| UCEC | cis | rs12220777 | 1 | rs11201312 | chr10:81795778 | LOC219347 | chr10:81805991-81838949:- | 0.65 | 4.7 | 5.66E-6 | Chronic obstructive pulmonary disease-related biomarkers |
| UCEC | cis | rs12220777 | 1 | rs11201660 | chr10:81854531 | LOC219347 | chr10:81805991-81838949:- | -0.71 | -5.24 | 5.28E-7 | Chronic obstructive pulmonary disease-related biomarkers |
| UCEC | cis | rs4660306 | 1 | rs11211132 | chr1:45990516 | CCDC163P | chr1:45960581-45965646:- | -0.57 | -7.31 | 1.45E-11 | Homocysteine levels |
| UCEC | cis | rs9815354 | 1 | rs1125203 | chr3:41760895 | ULK4 | chr3:41288091-42003660:- | 0.51 | 6.28 | 3.36E-9 | Diastolic blood pressure |
| UCEC | cis | rs2602836 | 1 | rs1133483 | chr4:100023923 | ADH4 | chr4:100044835-100065449:- | -0.38 | -5.61 | 9.48E-8 | HDL cholesterol |
| UCEC | cis | rs10935120 | 1 | rs1138273 | chr3:134261437 | ANAPC13 | chr3:134196547-134204865:- | 0.4 | 4.63 | 7.74E-6 | Height |